Hüning AK, Melzner F, Thomsen J, Gutowska MA, Krämer L, Frickenhaus S, Rosenstiel P, Pörtner HO, Philipp EER, Lucassen M. (2012)
Impacts of seawater acidification on mantle gene expression patterns of the Baltic Sea blue mussel: implications for shell formation and energy metabolism.
submitted 

Heinrich S, Frickenhaus S, Glöckner G, Valentin K. (2011) Saccharina latissima (Phaeophyceae) transcriptome under light and temperature stress, European Journal of Phycology, accepted

Windisch H, Kathöver R, Pörtner H-O, Frickenhaus S, Lucassen M (2011) Thermal acclimation in Antarctic fish: Transcriptomic profiling of metabolic pathways. Am J Physiol Regul Integr Comp Physiol 301:R1453-R1466, doi:10.1152/ajpregu.00158.2011

Beszteri S, Yang I, Jäckisch N, Tillmann U, Frickenhaus S, Glöckner G, Cembella A, John U. (2011)  Transcriptomic response of the toxic prymnesiophyte Prymnesium parvum (N. Carter) to phosphorus and nitrogen starvation, submitted

Dissard D, Reichart G J, Frickenhaus S, Bijma J (2011) Stable Isotope and Mg/Ca and Sr/Ca ratios from planktonic foraminifera Globigerinoides sacculifer: testing a multi-proxy approach for inferring paleo-temperature and paleo-salinity. Geochimica et Cosmochimica Acta. under review

Van Opzeeland I C,  van Parijs S M, Frickenhaus S, Kreiss C M, Boebel O (2011) Individual variation in pup vocalizations and absence of behavioral signs of maternal vocal recognition in Weddell seals (Leptonychotes weddellii). Marine Mammal Science, online 22.7.2011, doi: 10.1111/j.1748-7692.2011.00505.x

Beszteri B, Temperton B, Frickenhaus S, Giovannoni S. J.(2010). Average genome size: a potential source of bias in comparative metagenomics, The ISME Journal, online 25.3.2010., doi:10.1038/ismej.2010.29.

Van Opzeeland I, Van Parijs S, Bornemann H, Frickenhaus S, Kindermann L, Klinck H, Plötz J, Boebel O (2010) Acoustic Ecology of Antarctic Pinnipeds. MEPS 414:267-291, doi: 10.3354/meps08683

Cock M, Sterck L, Rouzé P, Scornet D, Allen A, Amoutzias G, Anthouard V, Artiguenave F, Aury J, Badger J, Beszteri B, Billiau K, Bonnet E, Bothwell J, Bowler C, Boyen C, Brownlee C, Carrano C, Charrier B, Youn Cho G, Coelho A, Colln J, Corre E, Da Silva C, Delage L, Delaroque N, Dittami S, Doulbeau S, Elias M, Farnham G, Gachon C, Gschloessl B, Heesch S, Jabbari K, Jubin C, Kawai H, Kimura K, Kloareg B, Küpper F, Lang D, Le Bail A, Leblanc C, Lerouge P, Lohr M, Lopez P, Martens C, Maumus F, Michel G, MirandaSaavedra D, Morales J, Moreau H, Motomura T, Nagasato C, Napoli C, Nelson D, Nyvall Colln P, Peters S, Pommier C, Potin P, Poulain J, Quesneville H, Read B, Rensing S A, Ritter A, Rousvoal S, Samanta M, Samson G, Schroeder D, Sgurens B, Strittmatter M, Tonon T, Tregear J, Valentin K, von Dassow P, Yamagishi T, Van de Peer Y, Wincker P (2010) The Ectocarpus genome and the independent evolution of multicellularity in the brown algae. Nature 465, 617-621 (3 June 2010) doi:10.1038/nature09016 Letter

Metfies K, Gescher C, Frickenhaus S, Niestroy R, Wichels A, Gerdts G, Knefelkamp B, Wiltshire K, Medlin L M (2010) Contribution of the Class Cryptophycaea to the Phytoplankton Structure in the German Bight. Journal of Phycology, doi:10.1111/j.1529-8817.2010.00902.x

Alpermann T, Tillmann U, Beszteri B, Cembella AD & John U (2009)  Phenotypic variation and genotypic diversity in a planktonic population of the toxigenic marine dinoflagellate Alexandrium tamarense (Dinophyceae). Journal of Phycology. 46:1,18-32, doi:10.1111/j.1529-8817.2009.00767.x Supplementary material: R functions for testing marker saturation

Moustafa A, Beszteri B, Maier U, Bowler C, Valentin K & Bhattacharya D (2009) Genomic footprints of a cryptic plastid endosymbiosis in diatoms. Science 324: 1724-6.

Kegel, J.U., John, U., Frickenhaus, S., Metfies, K., Valentin, K.(2009). Comparative Functional Genomics of Virus-Susceptible and Virus-Resistant Strains of Emiliania huxleyi, Phycologia, 48(4, Supplement), 59.

Alpermann T, Beszteri B, John U, Tillmann U & Cembella A. Implications of life history transitions on the population genetic structure of the toxigenic marine dinoflagellate Alexandrium tamarense.  Molecular Ecology 18: 2122-33.

Kraemer, L., Beszteri, B., Gäbler-Schwarz, S., Held, C., Leese, F., Mayer, C., Pöhlmann, K., Frickenhaus, S.  (2009) STAMP: Extensions to the STADEN sequence analysis package for high throughput interactive microsatellite marker design.
BMC Bioinformatics 10:41.

Coyer JA, Hoarau G, Beszteri B, Pearson G & Olsen JL Expressed sequence tag derived polymorphic SSR markers for Fucus serratus and amplification in other species of Fucus. Molecular Ecology Resources 9: 168-170, doi: 10.1111/j.1755-0998.2008.02406.x.

Frickenhaus, S., Kannan, S., Zacharias, M. Efficient evaluation of sampling quality of molecular dynamics simulations by clustering of dihedral torsion angles and Sammon mapping, Jornal of Computational Chemistry, 30, p. 479-492  doi:10.1002/jcc.21076

Frickenhaus, S., Beszteri, B. Quicktree-SD. Software developed by AWI-Bioinformatics. http://hdl.handle.net/10013/epic.33164

Krell A, Beszteri B, Dieckmann G, Glöckner G, Valentin K & Mock T (2008). A new class of ice-binding proteins discovered in a salt-stress-induced cDNA library of the psychrophilic diatom Fragilariopsis cylindrus (Bacillariophyceae). European Journal of Phycology 43: 423-433. doi:10.1080/09670260802348615.

Bowler, C, Allen, AE, Badger, JH, Grimwood, J, Jabbari, K, Kuo, A, Maheswari, U, Martens, C, Maumus, F, Otillar, RP, Rayko, E, Salamov, A, Vandepoele, K, Beszteri, B, Gruber, A, Heijde, M, Katinka, M, Mock, T, Valentin, K, Verret, K, Berges, JA, Brownlee, C, Cadoret, J-P, Chiovitti, A, Choi, CJ, Coesel, S, De Martino, A, Detter, JC, Durkin, C, Falciatore, A, Fournet, J, Haruta, M, Huysman, MJJ, Jenkins, BD, Jiroutova, K, Jorgensen, RE, Joubert, J, Kaplan, A, Kröger, N, Kroth, PG, La Roche, J, Lindquist, E, Lommer, M, Martin–Jézéquel, , V, Lopez, PJ, Lucas, S, Mangogna, M, McGinnis, K, Medlin, LK, Montsant, A, Oudot–Le Secq, M-P, Napoli, C, Obornik, M, Schnitzler Parker, M, Petit, J-L, Porcel, BM, Poulsen, N, Robison, M, Rychlewski, L, Rynearson, TA, Schmutz, J, Shapiro, H, Siaut, M, Stanley, M, Sussman, MR, Taylor, AR, Vardi, A, von Dassow, P, Vyverman, W, Willis, A, Wyrwicz, LS, Rokhsar, DS, Weissenbach, J, Armbrust, EV, Green, BR, Van de Peer, Y & Grigoriev, IV (2008). The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature 456: 239-244, doi:10.1038/nature07410.

Gescher, C., Metfies, K., Frickenhaus, S., Knefelkamp, B., Wiltshire, K., Medlin, L.K. Assessing Community Composition of Prasinophytes at the Helgoland Reede Sampling Site with a DNA-Microarray: A Feasibility Study, Applied and Environmental Microbiology, 74, 17, pp. 5305-5316,  doi:10.1128/AEM.01271-08

John U, Beszteri, B, Derelle E, Van de Peer Y, Read B, Moreau H, Cembella A (2008). Novel insights into evolution of protistan polyketide synthases through phylogenomic analysis. Protist 159: 21-30, doi: 10.1016/j.protis.2007.08.001.

Metfies K, Borsutzki P, Gescher C, Medlin LK, Frickenhaus S  (2008) PhylochipAnalyzer - A Program for Analysing Hierarchical Probe-Sets.  Molecular Ecology Resources, 8, 99-102. doi:10.1111/j.1471-8286.2007.01927.x

Hanekamp, K, Bohnebeck, U, Beszteri, B, Valentin, K (2007). PhyloGena – a user-friendly system for automated phylogenetic annotation of unknown sequences. Bioinformatics 23: 793-801, doi: 10.1093/bioinformatics/btm016.

Läuter, M., Handorf, D., Rakowsky, N., Behrens, J., Frickenhaus, S., Best, M., Dethloff, K., and Hiller, W. (2007): A Parallel Adaptive Barotropic Model of the Atmosphere, Journal of Computational Physics, 223:609-628. doi: doi:10.1016/j.jcp.2006.09.029

Prof. Stephan Frickenhaus
Dr. Bánk Beszteri